METSIM adipose splice junction QTL summary statistics (Brotman and Raulerson et al. AJHG 2022)
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METSIM adipose splice junction QTL summary statistics (Brotman and Raulerson et al. AJHG 2022)
| Column label | Description |
| Splice | Chromosome:StartPosition:EndPosition:cluster |
| Exon | EnsemblID_StartPosition_EndPosition |
| ENSG | Ensembl ID from GENCODE v19 |
| Gene | Gene symbol |
| Variant | Chromosome:position_NonEffectAllele/EffectAllele |
| rsID | rsID of the variant, if none is available chr:pos |
| EAF | Effect allele frequency |
| pval | p-value of association between variant and splice/exon/gene |
| beta | Effect size of association between variant and splice/exon/gene |
| dist | Distance between variant and splice junction start |
| leadVariant | 1 if the variant is the most significant variant for the splice/exon/gene; otherwise 0 |
| . | |
| Files for download: | |
| Description | METSIM (n = 426) spliceQTL (± 250kb) – all results, including non-significant QTLs |
| Filename | spliceQTL_METSIM_n426_adipose_summaryStats_250kb_all.txt.gz |
| Size | 1.8 GB |
| Date | 2021-06-10 |
| . | |
| Description | METSIM (n = 426) exon eQTL (± 250kb) – all results, including non-significant QTLs |
| Filename | exonQTL_METSIM_n426_adipose_summaryStats_250kb_all.txt.gz |
| Size | 4.5 GB |
| Date | 2021-06-10 |
| . | |
| Description | METSIM (n = 426) gene eQTL (± 250kb) – all results, including non-significant QTLs |
| Filename | geneQTL_METSIM_n426_adipose_summaryStats_250kb_all.txt.gz |
| Size | 728 MB |
| Date | 2021-06-10 |
| . | |
| Description | METSIM (n = 426) gene eQTL (± 1Mb) – all results, including non-significant QTLs |
| Filename | geneQTL_METSIM_n426_adipose_summaryStats_1Mb_all.txt.gz |
| Size | 2.9 GB |
| Date | 2021-06-10 |
| —————– | —————————————————————————————————- |
| Column Label | Description |
| spliceID | Chromosome:StartPosition:EndPosition:cluster |
| ### | Percent spliced in for every splice junction per sample |
| exonID | EnsemblID_StartPosition_EndPosition |
| ### | Raw counts for every exon per sample |
| geneID | Ensembl ID from GENCODE v19 |
| ### | Raw counts for every gene per sample |
| . | |
| Files for download: | |
| Description | METSIM (n = 426) RNAseq splice junction quantification: percent spliced in for each splice junction–all splice junctions included |
| Filename | METSIM_n426_adipose_spliceJunction_PSI.txt.gz |
| Size | 101 MB |
| Date | 2021-06-10 |
| . | |
| Description | METSIM (n = 426) RNAseq exon quantification: raw counts for each exon per sample–all exons included |
| Filename | METSIM_n426_adipose_exon_rawCounts.txt.gz |
| Size | 263 MB |
| Date | 2021-06-10 |
| . | |
| Description | METSIM (n = 426) RNAseq gene quantification: raw counts for each gene per sample–all genes included |
| Filename | METSIM_n426_adipose_gene_rawCounts.txt.gz |
| Size | 19 MB |
| Date | 2021-06-10 |
| —————– | —————————————————————————————————- |
| Column Label | Description |
| transcript | Ensembl ID for transcript GENCODE v19 |
| gene | Ensembl ID for gene GENCODE v19 |
| length | transcript length in base pairs |
| effectiveLength | effective transcript length in base pairs |
| ### | raw counts or TPMs for every transcript per sample |
| . | |
| Files for download: | |
| Description | METSIM (n = 426) RNAseq transcript quantifications using Salmon: raw counts for each transcript per sample |
| Filename | METSIM_n426_adipose_Salmon_transcript_rawCounts.txt.gz |
| Size | 132 MB |
| Date | 2022-01-12 |
| . | |
| Description | METSIM (n = 426) RNAseq transcript quantifications using Salmon: transcripts per million (TPMs) for each transcript per sample |
| Filename | METSIM_n426_adipose_Salmon_transcript_TPM.txt.gz |
| Size | 148 MB |
| Date | 2022-01-12 |