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METSIM adiponectin GWAS (Spracklen et al., 2020)

Column Label
CHR:POS
A1/A2
NS
MAF
PVALUE
BETA
SEBETA
Description
chromosome:position (hg19)
Reference (A1) and alternate (A2) alleles
Number of samples
Minor allele frequency
P-value
Beta for trait for the alternate allele
Standard error of the beta
Files for download:  
Description
Filename
Size
Date
METSIM Adiponectin adjusted for BMI (GoT2D-Imputed)
Adipon_adjBMI_GoT2D.txt.gz
249 MB
2020-09-02
.  
Description
Filename
Size
Date
METSIM Adiponectin adjusted for BMI (HRC-Imputed)
Adipon_adjBMI_HRC.txt.gz
333 MB
2020-09-02
.  
Description
Filename
Size
Date
METSIM Adiponectin adjusted for fat mass % (GoT2D-Imputed)
Adipon_adjFM_GoT2D.txt.gz
249 MB
2020-09-02
.  

METSIM adipose tissue cis-eQTL summary statistics (Raulerson et al., 2019)

Column Label Description
ENSG Ensembl ID from GENCODE v19
Gene Gene name from GENCODE v19
Variant Chromosome:position_NonEffectAllele/EffectAllele
rsID rsID of the variant, if none is available chr:pos
EAF Effect allele frequency
pval pvalue of association between variant and gene
beta Effect size of association between variant and gene
SE Standard error from linear regression
File for download:  
Description METSIM RNAseq local eQTLs – all results, including non-significant cis-eQTLs
Filename
Size
Date
METSIM_adipose_ciseQTLs_summaryStats_all.txt.gz
2.3GB
2020-02-07
.  

 

Adiponectin exome array meta-analysis (Spracklen et al., 2019)

Column Label Description
MarkerName chromosome:position (hg19)
REF Reference allele
ALT Alternate allele
N Total Sample Size
EAF Effect (alternate) allele frequency
Nref Number of samples homozygous for reference allele
Nhet Number of samples heterozygous
Nalt Number of samples homozygous for alternate allele
beta Effect size (beta) for alternate allele
se Standard error of the beta
stat Statistic
direction Effect direction for each included study
hsq h-squared value
Pvalue Pvalue for association between variant and trait
CochranQ.df Degrees of freedom for Cochran Q test
CochranQ.Pval Pvalue for Cochran Q test
CochranQ.stat Statistic for Cochran Q test
I2 Heterogeneity I^2
File for download:  
File
Size
Date
Adiponectin Summary Statistics
544
2019-06-25
.  

 

China Health and Nutrition Survey glycemic trait results (Spracklen et al., 2017)

Column label Description
CHR:POS
A1/A2
NS
MAF
Pvalue
BETA
SEBETA
Chromosome:position (hg19)
Reference (A1) and alternate (A2) alleles
Number of samples called
Minor allele frequency
P-value for trait
Beta for trait for the alternative allele
Standard error of the beta
   
Files for download:  
File
Size
Date
CHNS_fasting_glucose_results.txt
560mb
2017-10-24
.  
File
Size
Date
CHNS_fasting_insulin_results.txt
557mb
2017-10-24
.  
File
Size
Date
CHNS_HbA1c_results.txt
532mb
2017-10-24
.  
File
Size
Date
CHNS_T2D_results.txt
583mb
2017-10-24