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METSIM adiponectin GWAS (Spracklen et al., 2020)

Column Label
CHR:POS
A1/A2
NS
MAF
PVALUE
BETA
SEBETA
Description
chromosome:position (hg19)
Reference (A1) and alternate (A2) alleles
Number of samples
Minor allele frequency
P-value
Beta for trait for the alternate allele
Standard error of the beta
Files for download:
Description
Filename
Size
Date
METSIM Adiponectin adjusted for BMI (GoT2D-Imputed)
Adipon_adjBMI_GoT2D.txt.gz
249 MB
2020-09-02
.
Description
Filename
Size
Date
METSIM Adiponectin adjusted for BMI (HRC-Imputed)
Adipon_adjBMI_HRC.txt.gz
333 MB
2020-09-02
.
Description
Filename
Size
Date
METSIM Adiponectin adjusted for fat mass % (GoT2D-Imputed)
Adipon_adjFM_GoT2D.txt.gz
249 MB
2020-09-02
.

METSIM adipose tissue cis-eQTL summary statistics (Raulerson et al., 2019)

Column LabelDescription
ENSGEnsembl ID from GENCODE v19
GeneGene name from GENCODE v19
VariantChromosome:position_NonEffectAllele/EffectAllele
rsIDrsID of the variant, if none is available chr:pos
EAFEffect allele frequency
pvalpvalue of association between variant and gene
betaEffect size of association between variant and gene
SEStandard error from linear regression
File for download:
DescriptionMETSIM RNAseq local eQTLs – all results, including non-significant cis-eQTLs
Filename
Size
Date
METSIM_adipose_ciseQTLs_summaryStats_all.txt.gz
2.3GB
2020-02-07
.

Adiponectin exome array meta-analysis (Spracklen et al., 2019)

Column LabelDescription
MarkerNamechromosome:position (hg19)
REFReference allele
ALTAlternate allele
NTotal Sample Size
EAFEffect (alternate) allele frequency
NrefNumber of samples homozygous for reference allele
NhetNumber of samples heterozygous
NaltNumber of samples homozygous for alternate allele
betaEffect size (beta) for alternate allele
seStandard error of the beta
statStatistic
directionEffect direction for each included study
hsqh-squared value
PvaluePvalue for association between variant and trait
CochranQ.dfDegrees of freedom for Cochran Q test
CochranQ.PvalPvalue for Cochran Q test
CochranQ.statStatistic for Cochran Q test
I2Heterogeneity I^2
File for download:
File
Size
Date
Adiponectin Summary Statistics
544
2019-06-25
.

China Health and Nutrition Survey glycemic trait results (Spracklen et al., 2017)

Column labelDescription
CHR:POS
A1/A2
NS
MAF
Pvalue
BETA
SEBETA
Chromosome:position (hg19)
Reference (A1) and alternate (A2) alleles
Number of samples called
Minor allele frequency
P-value for trait
Beta for trait for the alternative allele
Standard error of the beta
Files for download:
File
Size
Date
CHNS_fasting_glucose_results.txt
560mb
2017-10-24
.
File
Size
Date
CHNS_fasting_insulin_results.txt
557mb
2017-10-24
.
File
Size
Date
CHNS_HbA1c_results.txt
532mb
2017-10-24
.
File
Size
Date
CHNS_T2D_results.txt
583mb
2017-10-24