Data

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China Health and Nutrition Survey Data

Glycemic Traits Results (Spracklen et al. 2017)

 

The result files include the following columns:

Column Label             Description

#CHR:POS                chromosome:position (hg19)

A1/A2                       Reference (A1) and alternate (A2) alleles

NS                            number of samples called

MAF                          minor allele frequency

PVALUE                     P-value for trait

BETA                         beta for trait for the alternative allele

SEBETA                     standard error of the beta

 

Files can be downloaded here:

File                                  Size             Date

CHNS Glycemic Traits        774 MB       2017-10-24

 

Adiponectin Exome Array Meta-analysis

Adiponectin Results (Spracklen et al. 2019)

 

The result files include the following columns:

Column Label             Description

MarkerName                chromosome:position (hg19)

REF                              Reference allele

ALT                               Alternate allele

N                                  Total sample size

EAF                              Effect (alternate) allele frequency

Nref                              Number of samples homozygous for reference allele

Nhet                             Number of samples heterozygous

Nalt                              Number of samples homozygous for alternate allele

beta                             Effect size (beta) for alternate allele

se                                Standard error of the beta

stat                              Statistic

direction                     Effect direction for each included study

hsq                              h-squared value

Pvalue                        Pvalue for association between variant and trait

CochranQ.df              Degrees of freedom for Cochran Q test

CochranQ.pVal         Pvalue for Cochran Q test

CochranQ.stat          Statistic for Cochran Q test

I2                                Heterogeneity I^2

 

Files can be downloaded here:

File                                                                 Size             Date

Adiponectin Summary Statistics       544 MB       2019-o6-25

 

METSIM adipose tissue cis-eQTL summary statistics

Subcutaneous adipose tissue cis-eQTL Results 

 

The results have the following columns:

Column Label             Description

ENSG                           Ensembl ID from GENCODE v19

Variant                          chromosome:position_NonEffectAllele/EffectAllele

Pvalue                          pvalue of association between variant and gene

Beta                              effect size of association between variant and gene

Gene                            gene name from GENCODE v19

 

Files can be downloaded here:

File                                                                                                                                        Size             Date

METSIM RNAseq eQTLs                                                                                                   1.6 GB       2019-08-02

METSIM RNAseq eQTLs (subset: variant-gene pairs that are significant at FDR<1%)     24 MB       2019-08-02